Isolation and characterization of 16 tetranucleotide microsatellite loci in the red panda (Ailurus fulgens)

A total of 15 polymorphic tetranucleotide microsatellite loci in the red panda, Ailurus fulgens, were characterized in this study. Based on evaluations of 33 red pandas, the number of observed alleles for each locus ranged from seven to 17 and the expected and observed heterozygosities were 0.412–0.897 and 0.121–0.909, respectively. The mean polymorphic information content was 0.721. These markers would greatly strengthen the utilization of microsatellite tools in genetic variation studies in red panda populations.     

Bayesian Quantile Regression for Longitudinal Studies with Nonignorable Missing Data

Summary .  We study quantile regression (QR) for longitudinal measurements with nonignorable intermittent missing data and dropout. Compared to conventional mean regression, quantile regression can characterize the entire conditional distribution of the outcome variable, and is more robust to outliers and misspecification of the error distribution. We account for the within-subject correlation by introducing a   ℓ₂   penalty in the usual QR check function to shrink the subject-specific intercepts and slopes toward the common population values. The informative missing data are assumed to be related to the longitudinal outcome process through the shared latent random effects. We assess the performance of the proposed method using simulation studies, and illustrate it with data from a pediatric AIDS clinical trial.     

影响玉米螟微孢子虫病田间传播的因素

玉米螟微孢子虫病很早就被认为是玉米螟自然平衡的重要因素(Paillot,1928)。它对玉米螟的生存、繁殖和越冬都造成严重影响(zimmack等,1957;Kramer,1959;Frye等,1974;问锦曾,1975;Windels等,1976)。在室内饲养的玉米螟群体,常会因微孢子虫病的污染而毁灭。但在田间,玉米螟自然发病率一般仅0—40％(Weiser,1956;问锦曾.1975)。近年Lewis(1978)在田间小区玉米上人工接种螟虫的试验中发现,螟虫群体初始仅有25％染病,通过粪便传染,后期染病率可高达90％以上。显     

Integrated species delimitation and conservation implications of an endangered weevil Pachyrhynchus sonani (Coleoptera: Curculionidae) in Green and Orchid Islands of Taiwan

Oceanic islands are productive habitats for generating new species and high endemism, which is primarily due to their geographical isolation, smaller population sizes and local adaptation. However, the short divergence times and subtle morphological or ecological divergence of insular organisms may obscure species identity, so the cryptic endemism on islands may be underestimated. The endangered weevil Pachyrhynchus sonani Kôno (Coleoptera: Curculionidae: Entiminae: Pachyrhynchini) is endemic to Green Island and Orchid Island of the Taiwan‐Luzon Archipelago and displays widespread variation in coloration and host range, thus raising questions regarding its species boundaries and degree of cryptic diversity. We tested the species boundaries of P. sonani using an integrated approach that combined morphological (body size and shape, genital shape, coloration and cuticular scale), genetic (four genes and restriction site‐associated DNA sequencing, RAD‐seq) and ecological (host range and distribution) diversity. The results indicated that all the morphological datasets for male P. sonani, except for the colour spectrum, reveal overlapping but statistically significant differences between islands. In contrast, the morphology of the female P. sonani showed minimum divergence between island populations. The populations of P. sonani on the two islands were significantly different in their host ranges, and the genetic clustering and phylogenies of P. sonani established two valid evolutionary species. Integrated species delimitation combining morphological, molecular and ecological characters supported two distinct species of P. sonani from Green Island and Orchid Island. The Green Island population was described as P. jitanasaius sp.n. Chen & Lin, and it is recommended that its threatened conservation status be recognized. Our findings suggest that the inter‐island speciation of endemic organisms inhabiting both islands may be more common than previously thought, and they highlight the possibility that the cryptic diversity of small oceanic islands may still be largely underestimated.     

Quaternary arrangement of an active,native group II intron ribonucleoprotein complex revealed by small-angle X-ray scattering

The stable ribonucleoprotein (RNP) complex formed between the Lactococcus lactis group II intron and its self-encoded LtrA protein is essential for the intron’s genetic mobility. In this study, we report the biochemical, compositional, hydrodynamic and structural properties of active group II intron RNP particles (+A) isolated from its native host using a novel purification scheme. We employed small-angle X-ray scattering to determine the structural properties of these particles as they exist in solution. Using sucrose as a contrasting agent, we derived a two-phase quaternary model of the protein–RNA complex. This approach revealed that the spatial properties of the complex are largely defined by the RNA component, with the protein dimer located near the center of mass. A transfer RNA fusion engineered into domain II of the intron provided a distinct landmark consistent with this interpretation. Comparison of the derived +A RNP shape with that of the previously reported precursor intron (ΔA) particle extends previous findings that the loosely packed precursor RNP undergoes a dramatic conformational change as it compacts into its active form. Our results provide insights into the quaternary arrangement of these RNP complexes in solution, an important step to understanding the transition of the group II intron from the precursor to a species fully active for DNA invasion.     

不同含湿率及加载条件对人皮质骨纳米压痕测试的影响

目的:探讨不同含湿率及加载条件对人皮质骨纳米压痕测试的影响。方法:采用美国Hysitron纳米压痕仪,设定不同加载模式(高峰载荷分别为300、400、500 nm;加载速度分别为6、8、10 nm/s)对不同含湿率(20‰、30‰、40‰、50‰、60‰)人皮质骨进行弹性模量及硬度测量。结果:在同一加载模式下,不同含湿率标本的测试值随着含湿率增高,弹性模量及硬度值均显著降低(P0.01);三种不同加载模式对含湿率为20‰标本测试值无明显变化;对含湿率60‰标本测试值有显著性影响(P0.02)。结论:纳米压痕仪测试骨微观力学特性时,测试值不仅受标本本身含湿率的影响,当测试条件改变,对湿润标本测试结果也完全不同。当使用纳米压痕技术时,通常采用脱水包埋处理的标本测试出的机械性能,对我们在微观层面认识人体骨在湿润的生理环境下的机械性能是不够全面的。